National Science Foundation Yellowstone National Park Montana State University The Research Coordination Network
Dr. Boomer
Dr. Sarah M. Boomer
Associate Professor
Department of Biology
Western Oregon University
Monmouth, OR
Sarah Boomer's Images (6)
Enlarge this image
View More Enlarge Credit: Steven Jay
Website(s):
 • Personal Webpage
 • Red layer Microbial Observatory
Organism(s):
Chloroflexi
uncultured Chloroflexi bacterium

Project Summary: S. M. Boomer, Department of Biology, Western Oregon University, Monmouth, OR 97361, Boomer et al. 2005). Because we are funded by an NSF "Research in Undergraduate Institutions" category grant, all these field surveys have been carried out by undergraduate and/or secondary science teachers, with RLMO samples and methods facilitating projects related to extensive undergraduate lab curriculum development, pre-college outreach, and workshops for secondary science educators. These resources are available via our general RLMO website (www2.wou.edu:7777/pls/wou2/nsboomer.public3.main)

Hypotheses Tested (1998-2002)
The red layer bacterium is a new member of the Chloroflexi phylum - possibly an entirely new species.
These new Chloroflexi bacteria are more widely distributed in Yellowstone than previously thought.

Objectives (1998-2002)
(1) To isolate and describe PCR-amplified 16S genes from Yellowstone RLMO communities
(2) To perform extensive surveys throughout Yellowstone for RLMO communities, comparing
(3) To archive and share these data via our on-line RLMO database

Hypothesis Tested (2003-present)
Site-specific genetic variants are selected by environmental conditions (physical, temperature, pH)

Current Objectives
(1) To monitor geochemical signatures in geothermal groundwater at well-characterized RLMO sites
(2) To use these data in our efforts to develop designer media for as-yet-uncultured Red Chloroflexi
(3) To archive and share these data via our on-line RLMO database

Dr. Boomer is an author on these YNP topic Publications:
1 A Laboratory Class Exploring Microbial Diversity and Evolution Using On-Line Databases, the Biology Workbench, and Phylogenetic Software
ASM MicrobeLibrary Curriculum Resources, 2005
2 A Laboratory Class Exploring and Classifying Anoxygenic Phototrophic Bacteria Using Culture-Based Approaches, Microscopy, and Pigment Analysis
ASM MicrobeLibrary Curriculum Resources, 2005
3 The Red Layer Microbial Observatory Database:A Model for the Integration and Dissemination of Biological and Geochemical Data via the World Wide Web
Geothermal Biology and Geochemistry in YNP [TBI Text!], 2005
4 Molecular Characterization of Novel Red Green Nonsulfur Bacteria from Five Distinct Hot Spring Communities in Yellowstone National Park
Applied and Environmental Microbiology, 2002
5 Bacterial Diversity Studies Using the 16S rRNA Gene Provide a Powerful Research-Based Curriculum for Molecular Biology Laboratory
ASM Microbiology Education Journal, 2002
6 Characterization of novel bacteriochlorophyll-a-containing red filaments from alkaline hot springs in Yellowstone National Park
Archives of Microbiology, 2000

| About The RCN | Participants | Publications | Data Resources |
| Newsletter | Links | Events | Home |

YNP RCN, Montana State University, PO Box 173142, Bozeman, MT 59717-3142

© 2009 Montana State University Research Coordination Network. All Rights Reserved.